Dr. Erşen KAVAK - Adjunct Faculty
Technology Transfer Region
North Campus, ETAB 5th Floor
34342 Bebek - Istanbul
+90 212 970 06 88
|• Genomize webpage
• Erşen Kavak's resume
Bigdata analysis for preventive and Precision Medicine
The reactive medicine is evolving towards being preventive and personalized. This evolution requires the collaboration of genetics knowledge with computational approaches. I have been working on combining wet laboratory approaches with computational techniques including machine learning technologies and biostatistics. Multi-omics is my trending interest as it seems to be the only way to decipher human disease.
I am primarily running a bioinformatics and software company (Genomize), as well as part-time teaching at Bogazici University. I am also involved in several research projects in collaboration with Koc University and Sabanci University.
- CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing. Shukla et al. Nature 2011
- Meta-analysis of cancer gene expression signatures reveals new cancer genes, SAGE tags and tumor associated regions of co-regulation. NAR, 2010
- Analysis of the Wnt/B-catenin/TCF4 pathway using SAGE, genome-wide microarray and promoter analysis: Identification of BRI3 and HSF2 as novel targets. Cell Signalling, 2010
- Project MinE: study design and pilot analyses of a large-scale whole-genome sequencing study in amyotrophic lateral sclerosis. Eur. J. Human Genetics, 2018